From 66396aeb6f7c89eae2acf57589a6f9141ffb95d5 Mon Sep 17 00:00:00 2001
From: "A.G. Bocsardi" <bocsardi.gergely@gmail.com>
Date: Wed, 15 May 2024 12:33:39 +0200
Subject: [PATCH] first working version

---
 .devcontainer/devcontainer.json | 21 +++++++++++++
 .gitignore                      | 17 ++++++++++
 Dockerfile                      | 50 ++++++++++++++++++++++++++++++
 README.md                       | 55 ++++++++++++++++++++++++++++++++-
 install_packages.R              |  2 ++
 requirements.txt                |  4 +++
 6 files changed, 148 insertions(+), 1 deletion(-)
 create mode 100644 .devcontainer/devcontainer.json
 create mode 100644 .gitignore
 create mode 100644 Dockerfile
 create mode 100644 install_packages.R
 create mode 100644 requirements.txt

diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json
new file mode 100644
index 0000000..1648248
--- /dev/null
+++ b/.devcontainer/devcontainer.json
@@ -0,0 +1,21 @@
+{
+    "name": "Python and R Environment",
+    "build": {
+        "dockerfile": "../Dockerfile",
+        "options": [
+            "--platform=linux/amd64"
+        ]
+    },
+    "workspaceFolder": "/workspace",
+    "settings": {
+        "terminal.integrated.shell.linux": "/bin/bash"
+    },
+    "extensions": [
+        "ms-python.python",
+        "ikuyadeu.r",
+        "ms-azuretools.vscode-docker"
+    ],
+    // "forwardPorts": [
+    //     8787
+    // ]
+}
\ No newline at end of file
diff --git a/.gitignore b/.gitignore
new file mode 100644
index 0000000..d64e264
--- /dev/null
+++ b/.gitignore
@@ -0,0 +1,17 @@
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# R data files
+*.RData
+*.rdata
+
+# RStudio files
+.Rproj.user/
+
+# Data files
+data/*
+
+# VS Code settings
+.vscode/
diff --git a/Dockerfile b/Dockerfile
new file mode 100644
index 0000000..2be1708
--- /dev/null
+++ b/Dockerfile
@@ -0,0 +1,50 @@
+FROM ubuntu:22.04
+
+USER root
+
+ENV DEBIAN_FRONTEND noninteractive
+
+## INSTALL R
+RUN apt update -y \
+    && apt upgrade -y \
+    && apt install -y \
+    software-properties-common \
+    dirmngr \
+    gnupg2 \
+    wget
+
+RUN wget -qO- https://cloud.r-project.org/bin/linux/ubuntu/marutter_pubkey.asc \
+    | tee -a /etc/apt/trusted.gpg.d/cran_ubuntu_key.asc \
+    && add-apt-repository -y "deb https://cloud.r-project.org/bin/linux/ubuntu $(lsb_release -cs)-cran40/" \
+    && apt-get update -y \
+    && apt-get install -y r-base
+
+
+# Install RStudio Server for Ubuntu 22.04
+RUN wget https://download2.rstudio.org/server/jammy/amd64/rstudio-server-2023.09.0-463-amd64.deb && \
+    apt-get install -y gdebi-core && \
+    gdebi -n rstudio-server-2023.09.0-463-amd64.deb && \
+    rm rstudio-server-2023.09.0-463-amd64.deb
+
+EXPOSE 8787
+
+
+RUN useradd -m -s /bin/bash -d /home/rstudio rstudio && \
+    echo "rstudio:rstudio" | chpasswd && adduser rstudio sudo
+
+# install python
+RUN apt-get install -y python3 python3-pip python3-dev python3-venv 
+
+
+# # Install Python packages
+WORKDIR /workspace
+
+
+COPY requirements.txt /workspace/
+RUN pip3 install --no-cache-dir -r requirements.txt
+
+COPY install_packages.R /workspace/
+RUN Rscript install_packages.R
+
+
+CMD /usr/lib/rstudio-server/bin/rserver --server-daemonize=0
\ No newline at end of file
diff --git a/README.md b/README.md
index 35e7443..d1f21de 100644
--- a/README.md
+++ b/README.md
@@ -1,2 +1,55 @@
 # r_python_docker_template
-This is my template for projects where I have to use both R and Python, and want to dockerize my environment.
+
+This repository is a template for creating a Dockerized development environment that includes the latest versions of Python and R, along with RStudio Server. It is designed to facilitate mixed-language projects and make development easier and more reproducible.
+
+## Getting Started
+
+### Prerequisites
+
+- Docker
+- Visual Studio Code
+- Remote - Containers Extension for VS Code
+
+### Setup
+
+1. Clone this repository:
+    ```sh
+    git clone https://github.com/gbocsardi/r_python_docker_template.git
+    cd r_python_docker_template
+    ```
+
+2. Build container:
+```sh
+    docker build -t python-r-env --platform linux/amd64 .
+```
+
+3. Run the container manually:
+```sh
+docker run --platform linux/amd64 -it --rm \         
+    -v $(pwd)/data:/workspace/data \
+    -v $(pwd)/code:/workspace/code \
+    -p 8787:8787 \
+    python-r-env
+```
+### Usage
+
+**Make sure your container is running!**
+
+#### VS Code for Python
+1. Open VS Code, and hit CMD+Shift+P to open the command palette.
+2. Seach for "Dev Containers: Attach to Running Container..."
+3. From the opened context menu select your container.
+4. You're in your `workspace` directory, the parent directory of `code/` and `data/`.
+
+#### RStudi Server for R
+
+- You can access RStudio Server at `http://localhost:8787`.
+- Login credentials are `rstudio` for both username and password (without quotes).
+- You're in your `workspace` directory, the parent directory of `code/` and `data/`.
+
+### Customization
+
+- **Adding Python Packages**: Update the `requirements.txt` file with the required packages.
+- **Adding R Packages**: Update the `install_packages.R` file with the required packages.
+
+
diff --git a/install_packages.R b/install_packages.R
new file mode 100644
index 0000000..26bd8f8
--- /dev/null
+++ b/install_packages.R
@@ -0,0 +1,2 @@
+install.packages("dplyr")
+install.packages("ggplot2")
diff --git a/requirements.txt b/requirements.txt
new file mode 100644
index 0000000..f30f7b3
--- /dev/null
+++ b/requirements.txt
@@ -0,0 +1,4 @@
+numpy
+pandas
+matplotlib
+
-- 
2.51.2